Systematics Collections Data

ICMP 5182 – Fusarium oxysporum Schltdl.

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 5182
Culture type:
Fungal Culture
Database record added:
25 January 2002
Database record updated:
11 February 2024
Components
Primary component
Active identification
Determined name:
Fusarium oxysporum Schltdl.
Determiner:
P.R. Johnston
Identification date:
2014-01 (Verbatim: Jan 2014)
Preferred name:
Fusarium oxysporum Schltdl.
Division:
Ascomycota
Class:
Sordariomycetes
Order:
Hypocreales
Family:
Nectriaceae
Identification type:
Determination
Note:
redet based on EF1a and IGS, Johnston et al. 2007 Landcare Research Contract Report: LC0607/177, referred to as 'saprobe Clade D'; based on EF1a matches haplotypes ST 3, 35, 67, 76, 82, 84, 85, 86, 174, 181, 208, 227 sensu O'Donnell et al. Fungal Genetics and Biology 46: 936-948, 2009 ITS - D. Lee, 2023
Associations:
isolated from Brassica napus L. var. napobrassica (L.) Reichen.
Other identifications
Identification
Determined name:
Fusarium oxysporum Schlechtendal f. sp. conglutinans
Determiner:
Identification date:
Preferred name:
Fusarium oxysporum f.sp. conglutinans (Wollenw.) W.C. Snyder & H.N. Hansen
Active:
no
Identification type:
Received as
Identification
Determined name:
Fusarium oxysporum f.sp. conglutinans (Wollenw.) W.C. Snyder & H.N. Hansen
Determiner:
Identification date:
Preferred name:
Fusarium oxysporum f.sp. conglutinans (Wollenw.) W.C. Snyder & H.N. Hansen
Active:
no
Identification type:
Determination
Note:
based on EF1a and IGS, Johnston et al. 2007 Landcare Research Contract Report: LC0607/177, referred to as 'saprobe Clade D'; based on EF1a matches haplotypes ST 3, 35, 67, 76, 82, 84, 85, 86, 174, 181, 208, 227 sensu O'Donnell et al. Fungal Genetics and Biology 46: 936-948, 2009
Other components
Active identification
Determined name:
Brassica napus L. var. napobrassica (L.) Reichen.
Determiner:
Identification date:
Preferred name:
Brassica napus L.
Division:
Tracheophyta
Class:
Magnoliopsida
Order:
Brassicales
Family:
Cruciferae
Vernacular name:
swede
Identification type:
Determination
Present:
no
Collection events
Primary collection event
Collection event type:
Field
Standard locality
Location:
Ruatoria
Georeferences:
Latitude and Longitude (WGS84):  -37.893194  178.316426 
Verbatim locality:
Ruatoria
Verbatim collector:
Miller
Standardised collector:
Miller
Verbatim date:
1966/01/00
Start date:
1966-01
Country:
New Zealand
New Zealand Area Codes:
Gisborne
Native lands:
Ngāti Porou
Georeferences:
New Zealand Map Grid:  2977021.3E 6354270.5N  (WGS84 -37.890309 178.310494)
Culture flags
Price Category:
Category 1
Culture notes
Note:
oxysporum O'Donnell et al. 2009 Haplotypes 3, 35, 67, 76, 82, 84, 85, 86, 174, 181, 208, 227
External links
CIS - PDD:

PDD 25142

GenBank:

KM092466 - tef1

OR543760 - genomic DNA

Literature:

O’Donnell, Kerry; Gueidan, Cécile; Sink, Stacy; Johnston, Peter R.; Crous, Pedro W.; Glenn, Anthony; Riley, Ron; Zitomer, Nicholas C.; Colyer, Patrick; Waalwijk, Cees; Lee, Theo van der; Moretti, Antonio; Kang, Seogchan; Kim, Hye-Seon; Geiser, David M.; Juba, Jean H.; Baayen, Robert P.; Cromey, Matthew G.; Bithell, Sean; Sutton, Deanna A.; Skovgaard, Kerstin; Ploetz, Randy; Corby Kistler, H.; Elliott, Monica; Davis, Mike; Sarver, Brice A.J. (2009)A two-locus DNA sequence database for typing plant and human pathogens within the Fusarium oxysporum species complex.Fungal Genetics and Biology46(12)936-948. DOI: 10.1016/j.fgb.2009.08.006

Culture events
Isolated:
Date:
01 January 1966 (Verbatim: 01 Jan 1966)
Deposited:
Note:
Derived from earliest batch date
Actioned by:
Joan M. Dingley (Reference number 6623)
Date:
01 December 1976 (Verbatim: 01 Dec 1976)
Duplicates
ARS Culture Collection: NRRL 38491
Direction:
Sent
Assigned reference numbers
PDDCC:
PDDCC 5182
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice